Genomic-scale analysis of DNA words of arbitrary length by parallel computation.
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Genomic-scale analysis of DNA words of arbitrary length by parallel computation.

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Genomic-scale analysis of DNA words of arbitrary length by parallel computation.

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dc.contributor.author Yang, X. Y.
dc.contributor.author Ripoll, A.
dc.contributor.author Arnau Llombart, Vicente
dc.contributor.author Marín Lozano, Ignacio
dc.contributor.author Luque, E.
dc.date.accessioned 2015-12-16T12:51:46Z
dc.date.available 2015-12-16T12:51:46Z
dc.date.issued 2006
dc.identifier.uri http://hdl.handle.net/10550/49537
dc.description.abstract In the post-genomic era, one of the main tasks is deciphering the meaning of the DNA sequences of complex organisms. In order to do so, there is a clear need for biocomputer tools able to extract and order the information of long DNA molecules, such as whole chromosomes or even complete genomes. However, most genomic analyses have been concentrated on the detection and counting of short words having sizes of between 1 and 10 nucleotides. In this paper, we describe parallel algorithms with different complexities that exhaustively determine all words of size k, k being arbitrarily large, in a source DNA sequence. The results shown that our algorithms achieve a high degree of scalability, allowing the detection of DNA words of 64 nucleotides in only 800 seconds.
dc.language.iso eng
dc.relation.ispartof NIC SERIES, 2006, vol. 33, p. 623-630
dc.rights.uri info:eu-repo/semantics/openAccess
dc.source Yang, X. Y. Ripoll, A. Arnau Llombart, Vicente Marín Lozano, Ignacio Luque, E. 2006 Genomic-scale analysis of DNA words of arbitrary length by parallel computation. NIC SERIES 33 623 630
dc.subject Genètica
dc.subject Genòmica
dc.subject ADN
dc.title Genomic-scale analysis of DNA words of arbitrary length by parallel computation.
dc.type info:eu-repo/semantics/article
dc.date.updated 2015-12-16T12:51:47Z
dc.identifier.idgrec 035520

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