EvalMSA: a Program to Evaluate Multiple Sequence Alignments and Detect Outliers
NAGIOS: RODERIC FUNCIONANDO

EvalMSA: a Program to Evaluate Multiple Sequence Alignments and Detect Outliers

DSpace Repository

EvalMSA: a Program to Evaluate Multiple Sequence Alignments and Detect Outliers

Show full item record

View       (773.9Kb)

    
Chiner-Oms, Alvaro; González Candelas, Fernando Perfil
This document is a artículoDate2016

Este documento está disponible también en : http://hdl.handle.net/10550/57211
We present EvalMSA, a software tool for evaluating and detecting outliers in multiple sequence alignments (MSAs). This tool allows the identification of divergent sequences in MSAs by scoring the contribution of each row in the alignment to its quality using a sum-of-pair-based method and additional analyses. Our main goal is to provide users with objective data in order to take informed decisions about the relevance and/or pertinence of including/retaining a particular sequence in an MSA. EvalMSA is written in standard Perl and also uses some routines from the statistical language R. Therefore, it is necessary to install the R-base package in order to get full functionality. Binary packages are freely available from http://sourceforge.net/projects/evalmsa/ for Linux and Windows.

    Chiner-Oms, Alvaro González Candelas, Fernando 2016 EvalMSA: a Program to Evaluate Multiple Sequence Alignments and Detect Outliers Evolutionary Bioinformatics 12 277 284
http://dx.doi.org/10.4137/EBO.S40583

This item appears in the following Collection(s)

Show full item record

Search DSpace

Advanced Search

Browse

Statistics